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weiningerworks.com        home page (HTML) (WEB PAGE PDF)
	MS-BLOCK / EV-D68 (HTML) (WEB PAGE PDF)
		Weininger, A.; Weininger, S. (2016) “Common Features in Picornaviruses, Alpha-bungarotoxin, Myelin P2, and CRABP Suggest Structural Bases for Multiple Sclerosis, Guillain-Barré Syndrome, and Paralysis Induction” (HTML)   (24 MB PDF)   (12 MB PDF)   (6 MB PDF)   (3 MB PDF)
			Picornavirus Monograph Errata Weininger, A.; Weininger, S. (2016) “Common Features in Picornaviruses, Alpha-bungarotoxin, Myelin P2, and CRABP Suggest Structural Bases for Multiple Sclerosis, Guillain-Barré Syndrome, and Paralysis Induction” (HTML) (WEB PAGE PDF)
			ICOS135.PDB Ideal 135 Angstrom-on-an-edge icosahedron (PDB)
			TRI78.PDB Ideal 78 Angstrom-on-a-side equilateral triangles, positioned with their vertices on ICOS135 icosahedron edges, and 45 (and 90) Angstroms away from ICOS135 icosahedron vertices (PDB)
			CASOG_ONE_CAPSID_POINTS.PDB Points at the vertices of scalene equilateral triangles coplanar with, positioned within, and sharing one vertex with, TRI78 triangles (PDB)
			CASOG_TWO_CAPSID_POINTS.PDB Ideal 26 Angstrom-on-a-side equilateral triangles, positioned at the corner of, and coplanar with, TRI78 equilateral triangles (PDB)
			PICORNAVIRUS_TILING_POINTS.PDB Idealized superposition points for creating picornavirus capsid tiling pieces, myelin P2 trimers, and CRABP trimers. These points are all located on or within the first listed triangle in TRI78, which is within the first ICOS135 listed triangle (i.e., the first icosahedron face). Chain 1 contains CASOG-1 tiling points. Chain 2 contains CASOG-2 tiling points. Chain 3 contains myelin P2/CRABP trimer tiling points (PDB)
			Picornavirus Monograph Superposition Shell Script Description (HTML) (PDF) picornavirus_superposition_script.sh (complete script supporting '-c' ANSI/VT100 color and '-h' help options) (SH) picornavirus_superposition_simple_script.sh (simpler script with no options, better for editing) (SH)
		Vogt MR, Wright PF, Hickey WF, De Buysscher T, Boyd KL, Crowe JE Jr. (2016) Enterovirus D68 in the Anterior Horn Cells of a Child with Acute Flaccid Myelitis. N Engl J Med (2022) 386:2059-2060. doi: 10.1056/NEJMc2118155 (EXTERNAL HTML REFERENCE)
		Williams C, Thomas R, Pickersgill T, Lyons M, Lowe G, Stiff R, Moore C, Jones R, Howe R, Brunt H, Ashman A, Mason B. (2016) Cluster of atypical adult Guillain-Barré syndrome temporally associated with neurological illness due to EV-D68 in children, South Wales, United Kingdom, October 2015 to January 2016. Euro Surveill. 21(4):pii=30119. doi: 10.2807/1560-7917.ES.2016.21.4.30119 (EXTERNAL HTML REFERENCE)
		Andrés C, Vila J, Creus-Costa A, Piñana M, González-Sánchez A, Esperalba J, Codina MG, Castillo C, Martín MC, Fuentes F, Rubio S, García-Comuñas K, Vásquez-Mercado R, Saubi N, Rodrigo C, Pumarola T, Antón A (2022) Enterovirus D68 in Hospitalized Children, Barcelona, Spain, 2014–2021. Emerg Infect Dis. 2022 Jul;28(7): 1327-1331. doi: 10.3201/eid2807.220264 (EXTERNAL HTML REFERENCE)
		Harvala H, Broberg E, Benschop K, Berginc N, Ladhani S, Susi P, Christiansen C, McKenna J, Allen D, Makiello P, McAllister G, Carmen M, Zakikhany K, Dyrdak R, Nielsen X, Madsen T, Paul J, Moore C, von Eije K, Piralla A, Carlier M, Vanoverschelde L, Poelman R, Anton A, López-Labrador FX, Pellegrinelli L, Keeren K, Maier M, Cassidy H, Derdas S, Savolainen-Kopra C, Diedrich S, Nordbø S, Buesa J, Bailly JL, Baldanti F, MacAdam A, Mirand A, Dudman S, Schuffenecker I, Kadambari K, Neyts J, Griffiths MJ, Richter J, Margaretto C, Govind S, Morley U, Adams O, Krokstad S, Dean J, Pons-Salort M, Prochazka B, Cabrerizo M, Majumdar M, Nebbia G, Wiewel M, Cottrell S, Coyle P, Martin J, Moore C, Midgley S, Horby P, Wolthers K, Simmonds P, Niesters H, Fischer TK. (2018) Recommendations for enterovirus diagnostics and characterisation within and beyond Europe. Journal of Clinical Virology 101 (2018) 11–17. doi: 10.1016/j.jcv.2018.01.008 (EXTERNAL HTML REFERENCE)
		Weininger MS-BLOCK Patent Application Israel Patent Application #235702 (PDF)
			MSBLOCK.PDB (PDB)
	FLU-LOCK (HTML) (WEB PAGE PDF)
		Li, Q., Sun, X., Li, Z., Liu, Y., Vavricka, C. J., Qi, J., & Gao, G. F. (2012). Structural and functional characterization of neuraminidase-like molecule N10 derived from bat influenza A virus. Proceedings of the National Academy of Sciences, 109(46), 18897-18902. dx.doi.org/10.1073/pnas.1211037109 (EXTERNAL HTML REFERENCE)
		Garcia-Sastre, A. (2012). The neuraminidase of bat influenza is not a neuraminidase. Proceedings of the National Academy of Sciences, 109(46) doi: dx.doi.org/10.1073/pnas.1215857109 (EXTERNAL HTML REFERENCE)
		Weininger A, Weininger S. (2015) Using Common Spatial Distributions of Atoms to Relate Functionally Divergent Influenza Virus N10 and N11 Protein Structures to Functionally Characterized Neuraminidase Structures, Toxin Cell Entry Domains, and Non-Influenza Virus Cell Entry Domains. doi: dx.doi.org/10.1371/journal.pone.0117499 (EXTERNAL HTML REFERENCE) (16 MB PDF – LOCAL COPY)    (3 MB PDF – LOCAL COPY)
			WSUBP.PDB (PDB)
		Weininger, A.; Weininger S. “Finding an alternate binding site in a nucleoprotein trimer-trimer interface” Weininger Works Technical Notes (2013) Sept 10;4:1-22 (HTML) (PDF)
	Molecular Locks / HIV-LOCK (HTML) (WEB PAGE PDF)
		“Construction of De Novo Biological Process Control Circuits:   Parts & Engineering Principles”   Susan Weininger   EE 380 Computer Systems Colloquium   Stanford University   14 October 2009  (HTML)  Location of video player in website.   (PDF)    of “slides“ (VIDEO)  Try right mouse-down if left mouse does not work. (VIDEO)  Alternative method
		Molecular Parataxis: Molecular Locks and Boosters (2006 white paper) (PDF)
		Bioagent Detector Proposal Excerpt (2001) (PDF)
		Molecular Lock Patents (HTML)
	Lectures & Patents (HTML) (WEB PAGE PDF)
		“Understanding the Basis of Disease and   Finding Reliable, Druggable Targets” Arthur Weininger and Susan Weininger Cambridge Cheminformatics Meeting Cambridge University 7 December 2016 (PDF) of “slides“
		“Construction of De Novo Biological Process Control Circuits:   Parts & Engineering Principles”   Susan Weininger   EE 380 Computer Systems Colloquium   Stanford University   14 October 2009  (HTML)  Location of video player in website.   (PDF)    of “slides“ (VIDEO)  Try right mouse-down if left mouse does not work. (VIDEO)  Alternative method
		MS-BLOCK Patent Application Israel Patent Application #235702 (PDF)
			MSBLOCK.PDB (PDB)
		MS-BLOCK Patents Australia Issued #757472 (PDF) China Issued #ZL95197558.7 (PDF) Denmark Issued #DK0796344 (PDF) EPO Countries Application #07002519.2 (PDF) France Issued #FR0796344 (PDF) Germany Issued #69535384.5 (PDF) Greece Issued #796344 (PDF) India Application #1645/MAS/95 (PDF) Italy Issued #IT0796344 (PDF) Netherlands Issued #NL0796344 (PDF) Norway Issued #321557 (PDF) Portugal Issued #PT0796344 (PDF) Singapore Issued #42557 (PDF) Spain Issued #ES0796344 (PDF) Sweden Issued #SE0796344 (PDF) United States Issued #5871902 (PDF) United States Issued #8114962-B2 (PDF)
		N-Dimensional Pipeline Processor Patent Application Canada Patent Application #2818017 (PDF)
	Analytics Tests (HTML) (WEB PAGE PDF)
		Double blind AAAS protein structure general challenge (1988) Predicted the structure of CheY from sequence only. (PDF) of CheY documents
		Predicted the differences between the crystal structure and the solution structure of calmodulin. (1987) (PDF) of Calmodulin documents
		Determined the structural correspondence between the ADP-ribosylating enzymes Exotoxin A and diphtheria toxin (1986) There was no sequence homology between the proteins and only the structure of Exotoxin A4 was known. (PDF) of DT-ExoA documents
	Software (HTML) (WEB PAGE PDF)
		chainidPDB (HTML) (PDF)
		combinePDB (HTML)   (PDF)
		deviation (HTML)   (PDF)
		dist (HTML) (PDF)
		stripPDB (HTML) (PDF)
		twwistPDB (HTML) (PDF)
		wwavePDB (HTML) (PDF)
		Picornavirus Monograph Superposition Shell Script Description (HTML) (PDF)
			picornavirus_superposition_script.sh (complete script supporting '-c' ANSI/VT100 color and '-h' help options) (SH) picornavirus_superposition_simple_script.sh (simpler script with no options, better for editing) (SH)
			ICOS135.PDB Ideal 135 Angstrom-on-an-edge icosahedron (PDB)
			TRI78.PDB Ideal 78 Angstrom-on-a-side equilateral triangles, positioned with their vertices on ICOS135 icosahedron edges, and 45 (and 90) Angstroms away from ICOS135 icosahedron vertices (PDB)
			CASOG_ONE_CAPSID_POINTS.PDB Points at the vertices of scalene equilateral triangles coplanar with, positioned within, and sharing one vertex with, TRI78 triangles (PDB)
			CASOG_TWO_CAPSID_POINTS.PDB Ideal 26 Angstrom-on-a-side equilateral triangles, positioned at the corner of, and coplanar with, TRI78 equilateral triangles (PDB)
			PICORNAVIRUS_TILING_POINTS.PDB Idealized superposition points for creating picornavirus capsid tiling pieces, myelin P2 trimers, and CRABP trimers. These points are all located on or within the first listed triangle in TRI78, which is within the first ICOS135 listed triangle (i.e., the first icosahedron face). Chain 1 contains CASOG-1 tiling points. Chain 2 contains CASOG-2 tiling points. Chain 3 contains myelin P2/CRABP trimer tiling points (PDB)
		wwavePDB Tutorial #1: Molecular Switch at Sonic Hedgehog/Glycoprotein interface (HTML) (PDF)
		twwistPDB Tutorial: Aligning neuraminidase structures and substructures (HTML) (PDF)
		dist and deviation Tutorial: Making a population standard deviation matrix (HTML) (PDF)
			1A4Gatoms.pdb Selected 1A4G atoms (PDB)
			1W1Xatoms.pdb Selected 1W1X atoms (PDB)
			3H72atoms.pdb Selected 3H72 atoms (PDB)
			4K3Yatoms.pdb Selected 4K3Y atoms (PDB)
			4FVKatoms.pdb Selected 4FVK atoms (PDB)
		wwavePDB Output Example #4: Finding an alternate binding site in a nucleoprotein trimer-trimer interface (HTML) (PDF)
		wwavePDB Output Example #3: Finding a sialic acid binding site in a highly divergent N10 Neuraminidase (HTML) (PDF)
		wwavePDB Output Example #2: Using WWaveMarkers and building WWaveCores (HTML) (PDF)
		wwavePDB Output Example #1: Finding antigen features in an antigen-antibody interface (HTML) (PDF)
		August 31, 2018 Software Release Notes (HTML) (PDF)
	Contact Information (HTML) (WEB PAGE PDF)

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